{"id":11,"date":"2017-05-23T18:46:22","date_gmt":"2017-05-23T09:46:22","guid":{"rendered":"http:\/\/murayamalab.riken.jp\/en\/?page_id=11"},"modified":"2025-04-17T11:45:13","modified_gmt":"2025-04-17T02:45:13","slug":"publications","status":"publish","type":"page","link":"https:\/\/murayamalab.riken.jp\/en\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"

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Selected Publications<\/a><\/div>\n
Peer-reviewed publications<\/a><\/div>\n
Book chapters<\/a><\/div>\n<\/div>\n

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Selected publications<\/h2>\n
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  1. Amygdalo-cortical dialogue underlies memory enhancement by emotional association. Saito Y, Osako Y, Odagawa M, Oisi Y, Matsubara C, Kato S, Kobayashi K, Morita M, Johansen J, Murayama M. Neuron <\/em><\/strong>113(6) 931-948 Mar 2025.<\/li>\n
  2. Fast, cell-resolution, contiguous-wide two-photon imaging to reveal functional network architectures across multi-modal cortical areas. Ota K, Oisi Y, Suzuki T, Ikeda M, Ito Y, Ito T, Uwamori H, Kobayashi K, Kobayashi M, Odagawa M, Matsubara C, Kuroiwa Y, Horikoshi M, Matsushita J, Hioki H, Ohkura M, Nakai J, Oizumi M, Miyawaki A, Aonishi T, Ode T, Murayama M. Neuron <\/em><\/strong>109(11) 1810-1824 Jun 2021.<\/li>\n
  3. Top-down cortical input during NREM sleep consolidates perceptual memory. Miyamoto D, Hirai D, Fung CCA, Inutsuka A, Odagawa M, Suzuki T, Boehringer R, Adaikkan C, Matsubara C, Matsuki N, Fukai T, McHugh TJ, Yamanaka A, *Murayama M. Science<\/em><\/strong> 352(6291) 1315-1318 Jun 2016.<\/li>\n
  4. A top-down cortical circuit for accurate sensory perception. Manita S, Suzuki T, Homma C, Matsumoto T, Odagawa M, Yamada K, Ota K, Matsubara C, Inutsuka A, Sato M, Ohkura M, Yamanaka A, Yanagawa Y, Nakai J, Hayashi Y, Larkum ME, *Murayama M. Neuron<\/em><\/strong> 86(5) 1304-1316 Jun 2015.<\/li>\n
  5. Dendritic encoding of sensory stimuli controlled by deep cortical interneurons. Murayama M, P\u00e9rez-Garci E, Nevian T, Bock T, Senn W, *Larkum ME. Nature<\/em><\/strong> 457(7233) 1137-1141 Feb 2009.<\/li>\n<\/ol>\n<\/div>\n<\/section>\n

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    Peer-reviewed publications<\/h2>\n
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    1. Unraveling the neural code: analysis of large-scale two-photon microscopy data. Saito Y, Osako Y, Murayama M. Microscopy <\/em><\/strong>dfaf010 Feb 2025.<\/li>\n
    2. Amygdalo-cortical dialogue underlies memory enhancement by emotional association. Saito Y, Osako Y, Odagawa M, Oisi Y, Matsubara C, Kato S, Kobayashi K, Morita M, Johansen J, Murayama M. Neuron <\/em><\/strong>113(6) 931-948 Mar 2025.<\/li>\n
    3. Dynamics of directional motor tuning in the primate premotor and primary motor cortices during sensorimotor learning. Ebina T, Sasagawa A, Hong D, Setsuie R, Obara K, Masamizu Y, Kondo M, Terada S, Ozawa K, Uemura M, Takaji M, Watakabe A, Kobayashi K, Ohki K, Yamamori T, Murayama M, Matsuzaki M. Nature Communications<\/strong><\/em> 15(1) 7127 Aug 2024.<\/li>\n
    4. A multicolor suite for deciphering population coding of calcium and cAMP in vivo. Yokoyama T, Manita S, Uwamori H, Tajiri M, Imayoshi I, Yagishita S, Murayama M, Kitamura K, Sakamoto M. Nature Methods <\/em><\/strong>21(5) 897-907 May 2024.<\/li>\n
    5. Anatomical identification of a corticocortical top-down recipient inhibitory circuitry by enhancer-restricted transsynaptic tracing. Atsumi Y, Oisi Y, Odagawa M, Matsubara C, Saito Y, Uwamori H, Kobayashi K, Kato S, Kobayashi K, Murayama M. Frontiers in Neural Circuits <\/em><\/strong>17:1245097\u00a0Aug 2023.<\/li>\n
    6. Lighting up cosmic neuronal networks with transformative in vivo calcium imaging. *Murayama M, *Wake H. Neuroscience Research<\/strong><\/em> 179 1-2 2022.<\/li>\n
    7. Breaking trade-offs: development of fast, high-resolution, wide-field two-photon microscopes to reveal the computational principles of the brain. Ota K, Uwamori H, Ode T, *Murayama M. Neuroscience Research<\/strong><\/em> 179 3-14 2022 (review article).<\/li>\n
    8. Low computational-cost cell detection method for calcium imaging data. Ito T, Ota K, Ueno K, Oisi Y, Matsubara C, Kobayashi K, Ohkura M, Nakai J, Murayama M, *Aonishi T. Neuroscience Research<\/strong><\/em> 179 39-50 2022.<\/li>\n
    9. Imaging data analysis using non-negative matrix factorization. *Aonishi T, Maruyama R, Ito T, Miyakawa H, Murayama M, Ota K. Neuroscience Research<\/strong><\/em> 179 51-56 2021 (review article).<\/li>\n
    10. Protocol for cortical-wide field-of-view two-photon imaging with quick neonatal adeno-associated virus injection. Oomoto I, Uwamori H, Matsubara C, Odagawa M, Kobayashi M, Kobayashi K, Ota K, *Murayama M. STAR Protocols<\/strong><\/em> 2(4) 101007 2021.<\/li>\n
    11. Stepwise synaptic plasticity events drive the early phase of memory consolidation. Goto A, Bota A, Miya K, Wang J, Tsukamoto S, Jiang X, Hirai D, Murayama M, Matsuda T, McHugh T, Nagai T, *Hayashi Y. Science<\/strong><\/em> 374(6569) 857-863 2021.<\/li>\n
    12. Fast, cell-resolution, contiguous-wide two-photon imaging to reveal functional network architectures across multi-modal cortical areas. Ota K, Oisi Y, Suzuki T, Ikeda M, Ito Y, Ito T, Uwamori H, Kobayashi K, Kobayashi M, Odagawa M, Matsubara C, Kuroiwa Y, Horikoshi M, Matsushita J, Hioki H, Ohkura M, Nakai J, Oizumi M, Miyawaki A, Aonishi T, Ode T, *Murayama M. Neuron <\/em><\/strong>109(11) 1810-1824 Jun 2021.<\/li>\n
    13. The Roles of Cortical Slow Waves in Synaptic Plasticity and Memory Consolidation. Miyamoto D, Hirai D, *Murayama M. Frontiers in Neural Circuits<\/strong><\/em> 11:92 Nov 2017.<\/li>\n
    14. Dendritic Spikes in Sensory Perception. Manita S, Miyakawa H, Kitamura K, *Murayama M.
      \nFrontiers in Cellular Neuroscience<\/em><\/strong> 11(29) 2017. (mini review article)<\/li>\n
    15. Top-down cortical input during NREM sleep consolidates perceptual memory. Miyamoto D, Hirai D, Fung CCA, Inutsuka A, Odagawa M, Suzuki T, Boehringer R, Adaikkan C, Matsubara C, Matsuki N, Fukai T, McHugh TJ, Yamanaka A, *Murayama M. Science<\/em><\/strong> 352(6291) 1315-1318 Jun 2016.<\/li>\n
    16. Brief hind paw stimulation is sufficient to induce delayed somatosensory discrimination learning in C57BL\/6 mice. Hirasawa N, Yamada K, *Murayama M. Behavioural Brain Research<\/em><\/strong> 301 102-109 Mar 2016.<\/li>\n
    17. Craniotomy for cortical voltage-sensitive dye imaging in mice. Suzuki T, *Murayama M. Bio-protocol<\/em><\/strong>, 6, 3, Feb 2016.<\/li>\n
    18. The fiber-optic imaging and manipulation of neural activity during animal behavior. Miyamoto D, *Murayama M. Neuroscience Research<\/strong><\/em> 103 1-9 Feb 2016 (review article).<\/li>\n
    19. A top-down cortical circuit for accurate sensory perception. Manita S, Suzuki T, Homma C, Matsumoto T, Odagawa M, Yamada K, Ota K, Matsubara C, Inutsuka A, Sato M, Ohkura M, Yamanaka A, Yanagawa Y, Nakai J, Hayashi Y, Larkum ME, *Murayama M. Neuron<\/em><\/strong> 86(5) 1304-1316 Jun 2015.<\/li>\n
    20. Spike detection from noisy neural data in linear-probe recordings. *Takekawa T, Ota K, Murayama M, *Fukai T. Eur J Neuroscience<\/em><\/strong><\/em><\/strong> 39(11) 1943-1950 Jun 2014.<\/li>\n
    21. Fiber-optic calcium monitoring of dendritic activity in vivo. Murayama M, *Larkum ME. Cold Spring Harbor protocols<\/em><\/strong> 2012 218-225 Feb 2012.<\/li>\n
    22. The cellular basis of GABA(B)-mediated interhemispheric inhibition. Palmer LM, Schulz JM, Murphy SC, Ledergerber D, Murayama M, *Larkum ME. Science<\/strong><\/em> 335 989-993 Feb 2012.<\/li>\n
    23. Inhibitory regulation of dendritic activity in vivo. Palmer L, Murayama M, *Larkum ME. Frontiers in neural circuits<\/em><\/strong> 6, 26, 2012 (review article)<\/li>\n
    24. Optical recording of neuronal activity with a genetically-encoded calcium indicator in anesthetized and freely moving mice. L\u00fctcke H\u2020, Murayama M\u2020, Hahn T, Margolis DJ, Astori S, Zum Alten Borgloh SM, G\u00f6bel W, Yang Y, Tang W, K\u00fcgler S, Sprengel R, Nagai T, Miyawaki A, Larkum ME, *Helmchen F, *Hasan MT. Frontiers in neural circuits<\/em><\/strong> 4, 9 Apr 2010. \u2020 co-first author.<\/li>\n
    25. Enhanced dendritic activity in awake rats. Murayama M, *Larkum ME. PNAS<\/em><\/strong> 106(48) 20482-20486 Dec 2009.<\/li>\n
    26. In vivo dendritic calcium imaging with a fiberoptic periscope system. Murayama M, *Larkum ME. Nature protocols<\/em><\/strong> 4 1551-1559 2009.<\/li>\n
    27. Dendritic encoding of sensory stimuli controlled by deep cortical interneurons. Murayama M, P\u00e9rez-Garci E, Nevian T, Bock T, Senn W, *Larkum ME. Nature<\/em><\/strong> 457(7233) 1137-1141 Feb 2009.<\/li>\n
    28. Fiberoptic system for recording dendritic calcium signals in layer 5 neocortical pyramidal cells in freely moving rats. Murayama M, P\u00e9rez-Garci E, L\u00fcscher HR, *Larkum ME. Journal of neurophysiology<\/em><\/strong> 98 1791-1805 Sep 2007.<\/li>\n
    29. Optical monitoring of progressive synchronization in dentate granule cells during population burst activities. Murayama M, Miyazaki K, Kudo Y, Miyakawa H, *Inoue M. Eur J Neuroscience<\/em><\/strong> 21 3349-3360 Jun 2005.<\/li>\n<\/ol>\n<\/div>\n<\/section>\n

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      Book Chapter<\/h2>\n
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      1. Chapter 13. Dendritic integration in vivo, Palmer L, Murayama M, Larkum ME. Dendrites (3rd edition), Oxford University Press<\/em><\/strong>, Edited by Greg Stuart, Nelson Spruston, and Michael H\u00e4usser (2016)<\/li>\n
      2. Chapter 82. Fiber-Optic Calcium Monitoring of Dendritic Activity. Murayama M, Larkum ME. Imaging in Neuroscience: A Laboratory Manual, Cold Spring Harbor Laboratory Press<\/em><\/strong>, Edited By Fritjof Helmchen & Arthur Konnerth (2011)<\/li>\n<\/ol>\n<\/div>\n<\/section>\n

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